PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang06g08190.1
Common NameLR48_Vigan02g196700
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ERF
Protein Properties Length: 152aa    MW: 16824.9 Da    PI: 6.7824
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang06g08190.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.82e-163375349
             AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49
                    y GVr+++ +gr++AeIr p++   + r++lg+f+taeeAa a++  
  Vang06g08190.1 33 YLGVRRRP-WGRYAAEIRNPYT---KERHWLGTFDTAEEAAIAYDLS 75
                    77******.**********865...5******************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003804.0E-263295IPR001471AP2/ERF domain
PROSITE profilePS5103220.3233289IPR001471AP2/ERF domain
SuperFamilySSF541714.12E-203290IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.5E-263289IPR001471AP2/ERF domain
CDDcd000183.47E-263388No hitNo description
PRINTSPR003675.8E-93344IPR001471AP2/ERF domain
PfamPF008472.4E-93474IPR001471AP2/ERF domain
PRINTSPR003675.8E-95571IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 152 aa     Download sequence    Send to blast
MSETASTTKP MEDVPSLIYK NPIRRNSRRS TMYLGVRRRP WGRYAAEIRN PYTKERHWLG  60
TFDTAEEAAI AYDLSSINIS GINARTNFHY PFLSLPPPPI SLPPPPPPPT PELHQSVGVC  120
PEMNSAFDGD DESLVIASIL QSFSNSGNCS F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-153388359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-152988262ATERF1
3gcc_A3e-152988262ATERF1
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511911.11e-101PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A0L9TZH21e-108A0A0L9TZH2_PHAAN; Uncharacterized protein
TrEMBLA0A0S3SNK51e-108A0A0S3SNK5_PHAAN; Uncharacterized protein
STRINGGLYMA10G36300.24e-71(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF145131317
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12890.13e-30ERF family protein
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]